Sonja Aits
AI/ML methods in Medical and Biological Research, AI/ML for structural biology, neutron and x-ray science, Educational tools for learning about AI, AI in health care/pharma
Publications
Displaying of publications. Sorted by year, then title.
Deep learning for rapid and reproducible histology scoring of lung injury in a porcine model
Iran Augusto Silva, Salma Kazemi Rashed, Ludwig Hedlund, August Lidfeldt, Nika Gvazava, et al.
(2023)
PreprintEasyNER: A Customizable Easy-to-Use Pipeline for Deep Learning- and Dictionary-based Named Entity Recognition from Medical Text
Rafsan Ahmed, Petter Berntsson, Alexander Skafte, Salma Kazemi Rashed, Marcus Klang, et al.
(2023)
PreprintWhy any scientist can benefit from ChatGPT and other natural language processing tools
Sonja Aits
(2023)
OtherAn annotated high-content fluorescence microscopy dataset with Hoechst 33342-stained nuclei and manually labelled outlines
Malou Arvidsson, Salma Kazemi Rashed, Sonja Aits
(2023) Data in Brief, 46
Journal articleOpenChart-SE: A corpus of artificial Swedish electronic health records for imagined emergency care patients written by physicians in a crowd-sourcing project
Johanna Berg, Carl Aasa, Björn Appelgren Thorell, Sonja Aits
(2023)
PreprintAn annotated high-content fluorescence microscopy dataset with Hoechst 33342-stained nuclei and manually labelled outlines : Dataset record
Malou Arvidsson, Salma Kazemi Rashed, Sonja Aits
(2022)
OtherFiles and code for English dictionaries, gold and silver standard corpora for biomedical natural language processing related to SARS-CoV-2 and COVID-19 : Dataset record
Salma Kazemi Rashed, Rafsan Ahmed, Johan Frid, Sonja Aits
(2022)
OtherArtificial intelligence : — a vehicle or an obstacle on our path to a sustainable future?
Sonja Aits
(2022)
OtherYttrande över Europeiska kommissionens förslag till förordning om harmoniserade regler för artificiell intelligens
Johan Axhamn, Stefan Larsson, Anamaria Dutceac Segesten, Sonja Aits, Maria Hedlund, et al.
(2021)
OtherGuidelines for the use and interpretation of assays for monitoring autophagy (4th edition)
D.J. Klionsky, S. Aits, J. Jakobsson, F. Negoita, K. Pircs, et al.
(2021) Autophagy, 17 p.1-382
Journal articleEnglish dictionaries, gold and silver standard corpora for biomedical natural language processing related to SARS-CoV-2 and COVID-19
Salma Kazemi Rashed, Rafsan Ahmed, Johan Frid, Sonja Aits
(2020)
PreprintMethods to Detect Loss of Lysosomal Membrane Integrity
Sonja Aits
(2019) Methods in Molecular Biology, 1880 p.315-329
Book chapterDiscovery of Small Molecules That Induce Lysosomal Cell Death in Cancer Cell Lines Using an Image-Based Screening Platform
Romina J. Pagliero, Diego S. D'Astolfo, Daphne Lelieveld, Riyona D. Pratiwi, Sonja Aits, et al.
(2016) Assay and Drug Development Technologies, 14 p.489-510
Journal articleSensitive detection of lysosomal membrane permeabilization by lysosomal galectin puncta assay
Sonja Aits, Jennifer Kricker, Bin Liu, Anne Marie Ellegaard, Saara Hämälistö, et al.
(2015) Autophagy, 11 p.1408-1424
Journal articleMethods for the quantification of lysosomal membrane permeabilization : A hallmark of lysosomal cell death
Sonja Aits, Marja Jäättelä, Jesper Nylandsted
(2015) Methods in Cell Biology, 126 p.261-285
Book chapterLysosomal cell death at a glance
Sonja Aits, Marja Jäättelä
(2013) Journal of Cell Science, 126 p.1905-1912
Journal articleIdentification of Cytoskeleton-Associated Proteins Essential for Lysosomal Stability and Survival of Human Cancer Cells
Line Groth-Pedersen, Sonja Aits, Elisabeth Corcelle-Termeau, Nikolaj H.T. Petersen, Jesper Nylandsted, et al.
(2012) PLoS ONE, 7
Journal articleHAMLET Binding to α-Actinin Facilitates Tumor Cell Detachment.
Maria Trulsson, Hao Yu, Lennart Gisselsson, Yinxia Chao, Alexander Urbano, et al.
(2011) PLoS ONE, 6
Journal articleConserved features of cancer cells define their sensitivity to HAMLET-induced death; c-Myc and glycolysis.
Petter Storm, Sonja Aits, M K Puthia, A Urbano, T Northen, et al.
(2011) Oncogene, 30 p.4765-4779
Journal articleMechanisms of HAMLET-induced cancer cell death
Sonja Aits
(2010) Lund University Faculty of Medicine Doctoral Dissertation Series, 2010:53
DissertationHAMLET, a tumoricidal molecular complex from human milk
C Svanborg, S Aits, P Brest, L Gustafsson, K Mok, et al.
(2009) BMC Proceedings, 3 p.11-11
Conference paper: abstractCan misfolded proteins be beneficial? The HAMLET case.
Jenny Pettersson, Sonja Aits, Lotta Gustafsson, Anki Mossberg, Petter Storm, et al.
(2009) Annals of Medicine, 41 p.162-176
Journal article reviewHAMLET (human alpha-lactalbumin made lethal to tumor cells) triggers autophagic tumor cell death.
Sonja Aits, Lotta Gustafsson, Oskar Hallgren, Patrick Brest, Mattias Gustafsson, et al.
(2009) International Journal of Cancer, 124 p.1008-1019
Journal articleChanges in proteasome structure and function caused by HAMLET in tumor cells.
Lotta Gustafsson, Sonja Aits, Patrik Önnerfjord, Maria Trulsson, Petter Storm, et al.
(2009) PLoS ONE, 4
Journal articleRecurrent and multiple bladder tumors show conserved expression profiles.
David Lindgren, Sigurdur Gudjonsson, Kowan Ja Jee, Fredrik Liedberg, Sonja Aits, et al.
(2008) BMC Cancer, 8
Journal articleApoptosis and tumor cell death in response to HAMLET (human alpha-lactalbumin made lethal to tumor cells).
Oskar Hallgren, Sonja Aits, Patrick Brest, Lotta Gustafsson, Anki Mossberg, et al.
(2008) Advances in Experimental Medicine and Biology, 606 p.217-240
Journal article reviewMeta- and synchronous urothelial carcinomas with divergent genomic profiles show highly similar gene-expression profiles
David Lindgren, Sigurdur Gudjonsson, Fredrik Liedberg, Sonja Aits, Anna Andersson, et al.
(2006) European Urology Supplements, 5 p.804-804
Conference paper: abstract